FastQCFastQC Report
Wed 8 May 2024
EGAF00007960644

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960644
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499799
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10950.219088073405509No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9120.18247335428842396No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8440.16886788488972565No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8250.1650663566753835No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8130.1626653914873779No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7330.14665895690067407No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7050.14105670479532773No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6540.130852602746304No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6530.13065252231397023No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6370.12745123539662945No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG6350.12705107453196185No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5590.11184496167459318No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5410.10824351389258481No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)