FastQCFastQC Report
Wed 8 May 2024
EGAF00007960645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences499799
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22950.4591845922060668No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT17540.35094107831348204No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11850.23709531231555087No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11080.22168911902584837No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG8960.17927206737108317No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8740.17487029785973962No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC8010.16026442629937235No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7290.1458586351713389No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7190.14385783084800088No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7110.1422571873893305No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6890.13785541787798694No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6870.13745525701331934No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6830.13665493528398417No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC6510.13025236144930263No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5600.11204504210692698No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)