FastQCFastQC Report
Wed 8 May 2024
EGAF00007960646

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960646
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519503
Total Bases21.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT11590.22309784544073857No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG10120.19480156996205988No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC9460.18209711974714293No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8350.1607305443856917No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7890.15187592756923443No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7670.1476411108309288No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7540.14513871912193No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7180.13820901900470256No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6970.13416669393631991No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG6750.12993187719801427No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG6560.12627453546947756No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT6040.11626496863348237No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5430.10452297676818034No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)