FastQCFastQC Report
Wed 8 May 2024
EGAF00007960647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519503
Total Bases17.1 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18940.36457922283413186No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13260.2552439543178769No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG12100.23291492060681074No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9720.18710190316514053No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC8350.1607305443856917No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7940.15283838591884938No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7860.15129845255946547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7770.14956602753015863No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7450.14340629409262315No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT7270.13994144403400943No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA7260.13974895236408644No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA7200.13859400234454852No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC6620.12742948548901545No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6270.12069227704171101No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA6060.11664995197332836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)