FastQCFastQC Report
Wed 8 May 2024
EGAF00007960648

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960648
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503593
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT10890.21624605584271422No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9560.18983583965623033No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC8610.17097139952302753No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8370.1662056462262184No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7800.1548869821462967No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7690.15270267855192587No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7450.14793692525511673No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT7030.13959685698570076No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6310.12529959709527336No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACG6260.1243067318251048No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5880.11676095577182369No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5820.11556951744762138No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT5290.10504514558383456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)