FastQCFastQC Report
Wed 8 May 2024
EGAF00007960649

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960649
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503593
Total Bases16.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22370.4442079218734176No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT18060.358622935584887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12120.24067054148886102No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG11300.22438755105809652No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9390.1864600977376572No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8020.15925558933503842No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7830.15548270130839786No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7660.15210695938982471No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7650.15190838633579098No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7450.14793692525511673No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6970.13840541866149847No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6580.13066106955418363No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6290.12490245098720594No Hit
ATGTCCAACATGGACATCGATGGTATTAACACC6060.12033527074443051No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5700.11318664079921684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)