FastQCFastQC Report
Wed 8 May 2024
EGAF00007960650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508970
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC10440.20512014460577244No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC8570.16837927579228637No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8210.16130616735760456No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7860.15442953415721947No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7280.1430339705680099No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCG6880.13517496119614122No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAG6830.13419258502465764No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5860.1151344872978761No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5190.10197064659999606No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)