FastQCFastQC Report
Wed 8 May 2024
EGAF00007960651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences508970
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC14400.28292433738727235No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT10820.2125862035090477No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9780.19215277914218912No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8980.17643476039845177No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7870.1546260093915162No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7500.14735642572253768No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAGAC7430.14598109908246065No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7180.14106921822504273No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCCGT7030.13812208971059198No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5740.11277678448631549No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5390.1059001512859304No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)