FastQCFastQC Report
Wed 8 May 2024
EGAF00007960652

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960652
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495033
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC9700.1959465328574055No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC7850.15857528690006525No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7390.14928297709445634No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7380.14908097035955178No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7320.14786892995012454No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAG7000.1414047144331792No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCG6740.13615253932566113No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5250.1060535358248844No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5080.1026194213315072No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)