FastQCFastQC Report
Wed 8 May 2024
EGAF00007960653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences495033
Total Bases16.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23480.47431181355586394No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC14100.2848294962154038No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT10310.20826894368658252No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9520.1923104116291237No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7570.15291909832273806No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAGAC7440.15029301076897905No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7200.14544484913127004No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7100.14342478178222462No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7040.14221274137279738No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCCGT6740.13615253932566113No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5380.10867962337864344No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5000.10100336745227086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)