FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960654

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960654
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510035
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC10020.19645710588489024No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC8550.1676355544227357No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8160.15998902036134774No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8090.1586165655298166No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA6990.1370494181771839No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCG6940.1360690932975188No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAG6860.1345005734900546No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5780.113325556089288No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5290.10371837226856981No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)