FastQCFastQC Report
Wed 8 May 2024
EGAF00007960655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510035
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC14710.2884115795974786No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT10560.20704461458527357No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10110.1982216906682875No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8870.17390963365259246No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7920.15528346093895518No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7350.1441077573107728No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAGAC7330.14371562735890675No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCCGT6950.13626515827345184No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA6930.13587302832158576No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5950.1166586606801494No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5670.11116884135402472No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5220.10234591743703864No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)