FastQCFastQC Report
Wed 8 May 2024
EGAF00007960656

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960656
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498929
Total Bases20.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC10580.2120542201395389No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8250.1653541886721357No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC8170.163750754115315No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG8110.16254817819769946No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAA7480.14992113106273638No Hit
TGGGTCCGGCTTGCGGGTAGCTGCGCTAGTCGGGGCGACAG7060.14150309963942767No Hit
CTTGCGAGACGCTGCGCTAGTAGGGGCAACCGCCGGGTCCG6520.13067991638088786No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5810.11644943468910407No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5320.10662839802857721No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)