FastQCFastQC Report
Wed 8 May 2024
EGAF00007960657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498929
Total Bases16.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23410.4692050371896603No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC15580.31226887994083324No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT10230.20503919395344827No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT9540.19120957090086965No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC8380.16795976982696936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8060.16154603159968653No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT8010.16054388500167358No Hit
GCACCGACCTCCGCGGCGAGCCGTAAACCAGAC7810.15653529860962181No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCGAA7510.15052241902154415No Hit
CCGGCCGTGGCACCAACCAGCGCTGCCTCCCGT6510.1304794870612853No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5420.1086326912246031No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)