FastQCFastQC Report
Wed 8 May 2024
EGAF00007960658

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960658
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509407
Total Bases20.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG12100.23753109007139672No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9360.18374305810481598No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG9070.17805016421054284No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7570.14860416130913No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6630.13015133282424468No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC6450.12661781247607512No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6170.1211212252678114No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5720.11228742439738755No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5710.11209111771137814No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5680.11150219765334987No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC5380.10561299707306732No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5330.10463146364302021No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5270.1034536235269637No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)