FastQCFastQC Report
Wed 8 May 2024
EGAF00007960659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences509407
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12310.24165353047759455No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT12290.24126091710557568No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA12280.24106461041956628No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9820.19277316566124925No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC9240.18138737787270295No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7730.15174506828528073No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7600.14919308136715828No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7200.14134081392678152No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT7040.13819990695063084No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6830.13407746654443303No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG6080.11935446509372663No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5800.1138578778854629No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5700.1118948110253687No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5490.10777237061917092No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG5460.10718345056114267No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5300.10404254358499194No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5240.10286470346893545No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5140.10090163660884126No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)