FastQCFastQC Report
Wed 8 May 2024
EGAF00007960660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492707
Total Bases20.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG11890.24131989194389364No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9030.18327322323409248No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8700.17657553069065388No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT6890.1398397018917937No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6500.1319242470677299No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6250.12685023756512492No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC6190.12563247528449972No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5350.10858380335574692No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5280.10716308069501751No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5260.10675715993480914No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5140.10432163537355874No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5130.10411867499345452No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5100.10350979385314192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)