FastQCFastQC Report
Wed 8 May 2024
EGAF00007960661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492707
Total Bases16.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23150.46985327994122267No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12010.243755416505144No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA11910.24172581270410204No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11790.23929028814285164No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9460.1920005195785731No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC9030.18327322323409248No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7050.1430870679734609No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7030.1426811472132525No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7000.1420722660729399No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT6950.14105746417241888No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6680.1355775339096055No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5470.11101932791699731No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5340.10838084297564272No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5290.10736604107512172No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCGGT5090.10330683347303773No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC4990.10127722967199573No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC4990.10127722967199573No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)