FastQCFastQC Report
Wed 8 May 2024
EGAF00007960662

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960662
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511190
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG13480.2636984291554999No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9670.1891664547428549No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG9410.18408028326062717No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7460.14593399714391908No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6990.13673976407989202No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6920.13537041021929225No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC6780.1326317024980927No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5750.1124826385492674No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5710.11170015062892467No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG5450.10661397914669693No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5300.10367964944541169No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5260.10289716152506896No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAAC5160.10094094172421213No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGT5120.10015845380386941No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)