FastQCFastQC Report
Wed 8 May 2024
EGAF00007960663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511190
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG13460.26330718519532853No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA13440.2629159412351572No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT13080.2558735499520726No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC10320.20188188344842425No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC9990.19542635810559675No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7890.15434574228760345No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7750.1516070345664039No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7610.14886832684520435No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7520.1471077290244332No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6990.13673976407989202No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6240.12206811557346584No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5850.11443885835012423No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5640.11033079676832488No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5480.10720084508695397No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5400.10563586924626851No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5260.10289716152506896No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5180.1013321856843835No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTATG5130.1003540757839551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)