FastQCFastQC Report
Wed 8 May 2024
EGAF00007960664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497257
Total Bases20.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCAATCAGACGGTGACGTTTCTGGGTGCGTTTAGATG12440.2501724460389698No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCG8970.18038961744128287No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8880.17857968816929676No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7290.14660427103087537No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGT6820.137152418166059No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6610.13292924986475807No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTAC5730.11523216364978271No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA5670.1140255441351253No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTT5280.10618251728985212No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG5160.1037692782605373No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG5100.1025626587458799No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTAC5010.10075272947389377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)