FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007960665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences497257
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22890.46032534484180215No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG12760.25660775011714265No Hit
TTCCCGGTGCTGGCGAACGAGGGCAAATCTGAA12420.249770239534084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11740.23609521836796665No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAACAC9680.19466794836472892No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGGCC8450.16993224831425197No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7360.1480119937979757No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7290.14660427103087537No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT7260.14600096127354667No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCGGT7160.14398992874911767No Hit
CCGGACCCAGCGGTGGCACCGACTTCTGCGGCT6340.12749946204879972No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTGAC5660.1138244408826824No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5560.11181340835825337No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC5090.102361555493437No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5090.102361555493437No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTCGC5060.1017582457361083No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)