FastQCFastQC Report
Wed 8 May 2024
EGAF00007960666

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960666
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483634
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG15590.32235119946074925No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10130.20945591087475238No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9290.1920874049384452No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8760.1811287047643466No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8250.17058354044587437No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7690.15900453648833623No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6600.13646683235669949No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT5920.12240661326540318No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5700.11785771885351318No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5250.10855316210192005No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)