FastQCFastQC Report
Wed 8 May 2024
EGAF00007960667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences483634
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22700.4693631961359209No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC15590.32235119946074925No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11770.2433658510361141No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8200.16954970080680845No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8090.16727525360086345No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA6740.13936158334608403No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6400.13233147380043586No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5780.11951186227601865No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5530.11434266408068912No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5380.11124114516349139No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5160.10669225075160141No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5020.10379749976221687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)