FastQCFastQC Report
Wed 8 May 2024
EGAF00007960668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469480
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG14570.31034335860952544No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA9310.19830450711425407No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG9130.1944704779756326No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8600.18318139217858054No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7930.16891028371815625No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7550.16081622220328876No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6410.1365340376586862No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6160.13120899718837864No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5340.1137428644457698No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC4960.10564880293090229No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4770.10160177217346852No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4730.1007497656982193No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)