FastQCFastQC Report
Wed 8 May 2024
EGAF00007960669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469480
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22830.4862826957484877No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG21480.4575274772088268No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC14420.30714833432734084No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11630.24772088267870834No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7910.16848428048053166No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7820.16656726591122092No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6740.14356309107949222No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA6570.13994206355968306No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5560.11842890005964045No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5250.11182584987645906No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5020.10692681264377608No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC4920.10479679645565307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)