FastQCFastQC Report
Wed 8 May 2024
EGAF00007960670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484319
Total Bases19.8 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG14420.2977376481203504No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10180.21019204284779247No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG9250.19098982282338708No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8280.1709617008624481No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8150.168277519568714No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7250.14969472599670877No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6540.135034966623238No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6450.13317668726603746No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5540.11438741820989885No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5070.10468307045562945No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCT4890.10096651174122839No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)