FastQCFastQC Report
Wed 8 May 2024
EGAF00007960671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484319
Total Bases15.9 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG23550.4862497651341368No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC14600.30145420683475144No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT11410.23558852739619962No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8210.16951637247351437No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC7630.15754079439377766No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC7350.1517594808380427No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA6780.13999037824243937No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6070.1253306188689686No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5640.11645217305123276No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5090.10509602142389624No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTGAC5080.10488954593976284No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACGTC5030.10385716851909589No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG4920.10158593819362859No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)