FastQCFastQC Report
Wed 8 May 2024
EGAF00007960672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471750
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTG15290.3241123476417594No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA10280.21791202967673556No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG8630.18293587705352413No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG8450.17912029676735558No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT7950.1685214626391097No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATT7780.1649178590355061No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCG6160.1305776364599894No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCT6110.1295177530471648No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGAC5130.10874403815580286No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGAT5080.10768415474297828No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGG4900.10386857445680975No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)