FastQCFastQC Report
Wed 8 May 2024
EGAF00007960673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471750
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG22660.4803391626921038No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22510.47715951245363014No Hit
ACCGAACCTACTACTGATTACGGCGGTGACTCC15310.32453630100688924No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT10920.2314785373608903No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCAGC8060.1708532061473238No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC7940.1683094859565448No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGTTC6830.1447800741918389No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAGAA6110.1295177530471648No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCGCC5130.10874403815580286No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAACTG5070.10747217806041334No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTGAG5060.10726020137784845No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)