FastQCFastQC Report
Wed 8 May 2024
EGAF00007960674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522155
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA16680.319445375415346No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15710.3008685160536622No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15530.29742126380097866No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9850.18864130382740757No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8720.16700022024111616No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8460.16202085587612874No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA8180.15665846348306536No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6860.13137861363005238No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6600.12639924926506496No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6480.12410108109660925No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT6100.11682354856316611No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5640.10801390391741916No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAA5350.10245999751031783No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA5260.10073637138397601No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)