FastQCFastQC Report
Wed 8 May 2024
EGAF00007960675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences522155
Total Bases17.2 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34890.6681923949785025No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG16820.32212657161187774No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16430.3146575250643966No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9940.19036492995374937No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT9320.17849106108339477No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG8130.1557008934128755No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7240.13865614616349553No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7240.13865614616349553No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6940.1329107257423562No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6880.13176164165812834No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6390.12237745497026745No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6380.12218594095622948No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6300.12065382884392564No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6260.11988777278777374No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGTCC5680.10877995997357107No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT5580.1068648198331913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)