FastQCFastQC Report
Wed 8 May 2024
EGAF00007960676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506489
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA15370.30346167438976956No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15130.2987231706907751No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14640.28904872563866146No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT8740.17256050970504788No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8040.15873987391631406No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC8010.15814756095393975No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA7780.1536064949090701No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6670.13169091530122076No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6610.13050628937647213No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6290.12418828444447955No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5640.11135483692636958No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5470.10799839680624851No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAA5170.10207526718250544No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)