FastQCFastQC Report
Wed 8 May 2024
EGAF00007960677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506489
Total Bases16.7 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG34960.6902420388201915No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24580.4853017538386816No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15790.31175405586300986No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG15150.29911804599902464No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC8680.17137588378029928No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8400.16584762946480575No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG7590.14985517948069949No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6810.13445504245896753No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT6670.13169091530122076No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6580.12991397641409783No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6300.12438572209860432No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6090.12023953136198416No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5870.11589590297123925No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5860.11569846531711447No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGTCC5440.1074060838438742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)