FastQCFastQC Report
Wed 8 May 2024
EGAF00007960678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524269
Total Bases21.4 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA16850.32139989204015496No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA15830.3019442309196233No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG15210.29011824082675114No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9170.17491020830909323No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8270.15774344849685942No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA7940.15144896989904036No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7870.15011377746919996No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6550.12493586307792373No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6340.12093028578840251No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6210.11845064270441319No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT6200.11825990092872171No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5950.11349135653643454No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA5490.10471723485462615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)