FastQCFastQC Report
Wed 8 May 2024
EGAF00007960679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524269
Total Bases17.3 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG37350.7124205322077025No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG16870.3217813755915379No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15760.30060903848978293No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9260.17662688429031662No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8720.16632682840297633No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG7590.14477300774983834No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7460.14229336466584902No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC7350.14019520513324268No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6830.13027663279728535No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6460.12321918709670035No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG6420.12245621999393441No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6360.12131176933978549No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6340.12093028578840251No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6020.11482654896627495No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT5790.11043948812537074No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGTCC5520.10528946018170061No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)