FastQCFastQC Report
Wed 8 May 2024
EGAF00007960680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511290
Total Bases20.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGA16620.3250601419937804No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA14970.2927888282579358No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG14060.27499070977331846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGT9240.18071935692072993No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGC8080.1580316454458331No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAA7830.1531420524555536No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7690.15040388038099708No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6530.12771616890610027No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCG6520.1275205851864891No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAG6230.12184865731776487No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGT5580.10913571554303819No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGG5550.10854896438420465No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCA5140.10053003188014628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)