FastQCFastQC Report
Wed 8 May 2024
EGAF00007960681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511290
Total Bases16.8 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG35190.688259109311741No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24240.4740949363374993No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGATG16590.3244733908349469No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15370.30061217704238297No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCTAC9200.1799370220422852No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCCGT8460.16546382679105792No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGCTG7680.1502082966613859No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTCGT7020.13729977116704806No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATCCA6950.1359306851297698No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6800.1329969293356021No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATCCG6560.1283029200649338No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6310.12341332707465431No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCCCG6030.11793698292554128No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGCCG5730.11206947133720589No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTGGT5360.10483287371159224No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGTCC5170.10111678303897982No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)