FastQCFastQC Report
Wed 8 May 2024
EGAF00007960692

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960692
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469226
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5550.11827989071364331No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG5140.10954209698524804No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5100.10868962930442899No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC4790.10208300477808135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)