FastQCFastQC Report
Wed 8 May 2024
EGAF00007960693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences469226
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22200.47311956285457324No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT10900.23229744302319136No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9940.21183821868353417No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5370.1144437861499576No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT5320.11337820154893377No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC4810.10250923861849087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)