FastQCFastQC Report
Wed 8 May 2024
EGAF00007960694

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960694
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486348
Total Bases19.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC5600.11514388873810522No Hit
TTCGCGGGCACGCTGCAGGATCGCGTGCTGTTGGTCCATCG5570.11452704647700823No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG5330.10959230838823229No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC5160.10609686890868267No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)