FastQCFastQC Report
Wed 8 May 2024
EGAF00007960695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences486348
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT11720.24097971000189164No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG9860.20273548981387812No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC5760.11843371413062251No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTGCT5670.11658318734733153No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5370.11041476473636162No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC5190.10671371116977965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)