FastQCFastQC Report
Wed 8 May 2024
EGAF00007960706

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960706
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455208
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7560.16607792481678707No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7560.16607792481678707No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG7370.16190400871689425No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7220.15860881179592626No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7070.15531361487495826No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6760.14850354123829107No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6570.14432962513839828No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5450.11972548812850389No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5140.1129154144918367No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4700.10324950352366391No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)