FastQCFastQC Report
Wed 8 May 2024
EGAF00007960707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455208
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16090.3534647897225005No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15240.3347920071703485No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8390.18431134777947664No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7670.16849440255883025No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6930.15223809774872146No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6880.15113969877506547No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6290.13817859088592468No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6070.13334563540183828No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5440.11950580833377268No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5340.11730901038646069No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5150.11313509428656789No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4660.10237078434473912No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)