FastQCFastQC Report
Wed 8 May 2024
EGAF00007960708

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960708
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437760
Total Bases17.9 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7390.1688139619883041No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC6800.15533625730994152No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC6670.15236659356725146No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6490.1482547514619883No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA6480.1480263157894737No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6260.14300073099415203No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6050.13820358187134504No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5610.12815241228070176No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5340.12198464912280703No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG4780.10919225146198831No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4540.10370979532163742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)