FastQCFastQC Report
Wed 8 May 2024
EGAF00007960709

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960709
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences437760
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21100.48199926900584794No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT14740.33671418128654973No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG14100.32209429824561403No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7690.1756670321637427No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC6830.15602156432748537No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6400.14619883040935672No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6380.1457419590643275No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5970.13637609649122806No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA5910.13500548245614036No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5710.13043676900584797No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4950.11307565789473685No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG4800.10964912280701754No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG4760.10873538011695906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)