FastQCFastQC Report
Wed 8 May 2024
EGAF00007960710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455904
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG8050.17657226082684074No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7490.16428897311714746No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7440.16319225100021056No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7030.15419912964132798No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6990.15332175194777847No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6470.14191584193163473No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6190.1357741980767881No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5460.11976205516950936No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5410.11866533305257249No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAG4830.10594335649610444No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4810.10550466764932967No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)