FastQCFastQC Report
Wed 8 May 2024
EGAF00007960711

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960711
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences455904
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTATT16630.3647697760932126No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG16050.3520477995367446No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT8580.18819751526637185No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7330.16077946234294938No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6760.14827683020986873No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6640.1456446971292202No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6350.13928370885098615No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT6200.13599354250017548No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5580.12239418825015792No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5510.12085877728644627No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5160.11318172246788796No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA5070.11120762265740157No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG4570.10024040148803257No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)