FastQCFastQC Report
Wed 8 May 2024
EGAF00007960712

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960712
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443226
Total Bases18.1 Mbp
Sequences flagged as poor quality0
Sequence length41
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTAC7730.17440312617039616No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAG7570.17079322963905547No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTA7230.16312219950995654No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCC7010.15815859177936312No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTG6700.15116441724989058No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAG6280.1416884388551213No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCT6250.14101158325549495No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTG5440.1227364820655828No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCT5290.11935220406745091No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATT4470.10085148434432999No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)