FastQCFastQC Report
Wed 8 May 2024
EGAF00007960713

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007960713
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443226
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length33
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21140.4769575792033861No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTATT15860.35783099366914395No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACTGG15850.35760537513593516No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACGTT7930.17891549683457197No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTGGC7160.161542869777495No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTATC6750.15229250991593452No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAGAA6380.1439446241872092No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATGTA6080.13717606819094547No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCATT5720.12905380099542896No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAACAG5300.11957782260065972No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAGAA5260.11867534846782454No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAACAG4740.10694318474096737No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGGAA4540.10243081407679151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)